The EDA program can be compiled and run locally at your workstation.
To achieve this with a program edition titled Residue_E_Decomp_07_15.f90
,
perform:
$ gfortran Residue_E_Decomp_07_15.f90 -o Residue_E_Decomp_07_15.x
$ ./Residue_E_Decomp_07_15.x
The program will look for an input file
(ex: here) and whatever prmtop file should be
used with your specified mdcrd.
If you use a strip command in your cpptraj ASCII generation, then you’ll need
a stripped prmtop (either made with the outprefix
option of the strip command
or generated through the parmed program
in AmberTools).